PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G121200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 297aa    MW: 33135.6 Da    PI: 9.9452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G121200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.3e-147831687
            trihelix 16 emeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87
                        +++ +lrrg+lk+++W+ev++++     +    ++++qC++k+e+l+kry+ +  ++k+   s+ +s++++f++++a
  Prupe.2G121200.1.p  7 DKWYSLRRGNLKATHWQEVADAVahrcPAASPPKTAVQCRHKMEKLRKRYRTEISRAKSMpLSRFTSSWVHFKRMDA 83
                        68999****************9977767777899*************************977999**********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-15684No hitNo description
SMARTSM005951.2E-4989IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
SSTPIGDKWY SLRRGNLKAT HWQEVADAVA HRCPAASPPK TAVQCRHKME KLRKRYRTEI  60
SRAKSMPLSR FTSSWVHFKR MDAMEKGPAA AKRENSESPG EEDENDENEE EDDQDQELYE  120
ELRYGSNMKS MSKLYRNGVG VGGSGGSSGG GFRIRIPTGV SIAQPGTKVY PKMDPKFGLN  180
SNSGSGSGPG YGSAKVMREC GNSVRPGLGK REREGRERER DPVAEMVSAI KVLGDGFVRM  240
EQMKMEMARE IETMRMEMEM KRTEMILDSQ QRIVEAFAKA VSEKKKKAKR MPSPEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232402.10.0PREDICTED: uncharacterized protein LOC103331547, partial
TrEMBLM5X9S01e-179M5X9S0_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s05010.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-48Trihelix family protein